The NIH Library Bioinformatics Support Program is presenting a “Data Analysis on Microarray and NGS Data in Golden Helix SNP & Variation Suite (SVS) and VarSeq” class for June 24. The free training will be held in the NIH Library Training Room, Building 10, from 9 a.m. to 4 p.m. Registration is required (use the link provided below).
The morning class will begin with an overview lecture/demo focusing on SNP GWAS analysis and population-based NGS analysis workflows. Following the demo will be a hands-on session during which attendees will use SNP & Variation Suite (SVS).
The afternoon session will begin with an overview lecture/demo focusing on small-n NGS dataset analysis. Following the demo there will be a hands-on session during which attendees will use VarSeq to analyze gene panel and whole exome trio data to identify variants of interest.
You will learn how to use basic features in SNP & Variation Suite (SVS) and VarSeq:
SNP & Variation Suite (SVS)
- Data Management
- Data QC (quality control)
- GWAS workflows
- LD and Haplotype analysis
- Population-based NGS analysis workflows
- Data visualization
VarSeq
- Data Management
- Data QC (quality control)
- Variant Filtering and Annotation
- De novo, rare recessive, and compound het variant identification
- Data visualization
This class will be taught by Golden Helix research staff and is open to NIH staff.
Registration for this class is no longer available.
Last modified date: Tue, 01/09/2018 - 2:39pm