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Golden Helix: SNP & Variation Suite (SVS) and VarSeq – June 24

The NIH Library Bioinformatics Support Program​ is presenting a “Data Analysis on Microarray and NGS Data in Golden Helix SNP & Variation Suite (SVS) and VarSeq” class for June 24. The free training will be held in the NIH Library Training Room, Building 10, from 9 a.m. to 4 p.m. Registration is required (use the link provided below).

​​The morning class will begin with an overview lecture/demo focusing on SNP GWAS analysis and population-based NGS analysis workflows. Following the demo will be a hands-on session during which attendees will use SNP & Variation Suite (SVS).

​​The afternoon session will begin with an overview lecture/demo focusing on small-n NGS dataset analysis. Following the demo there will be a hands-on session during which attendees will use VarSeq to analyze gene panel and whole exome trio data to identify variants of interest.

​​You will learn how to use basic features in SNP & Variation Suite (SVS) and VarSeq:

SNP & Variation Suite (SVS)

  • Data Management
  • Data QC (quality control)
  • GWAS workflows
  • LD and Haplotype analysis
  • Population-based NGS analysis workflows
  • Data visualization

VarSeq

  • Data Management
  • Data QC (quality control)
  • Variant Filtering and Annotation
  • De novo, rare recessive, and compound het variant identification
  • Data visualization

​​This class will be taught by Golden Helix research staff and is open to NIH staff.

Findmore information on how to access the NIH Library license for SNP & Variation Suite (SVS) and VarSeq

Registration for this class is no longer available.

NIH Library Service
NIH Subject