Bioinformatics 1

  • BRB-ArrayTools

    BRB-ArrayTools is an integrated package for the visualization and statistical analysis of Microarray gene expression, copy number, methylation and RNA-Seq data.

    Last modified date: Tue, 09/11/2018 - 3:41pm
  • Cn3D

    Cn3D ("see in 3D") is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez Structure database. Cn3D is provided for Windows and Macintosh, and can be compiled on Unix.

    Last modified date: Fri, 04/06/2018 - 11:26am
  • Genomatix Genome Analyzer

    Genomatix Genome Analyzer accepts aligned reads from next generation sequencing experiments: ChIP, RNA, DNA, methylation, and small RNA. It provides visualization and interpretation, including generating and evaluating networks and pathways; performing extended literature searches, and sequence analyses and extraction.

    Last modified date: Tue, 11/05/2019 - 12:22pm
  • Golden Helix SNP and Variation Suite

    This tool includes SNP Analysis, CNV Analysis, DNA-Seq Analysis, and RNA-Seq Analysis. Additional features are variant maps, Manhattan plots and a Python scripting interface.

    Last modified date: Thu, 03/28/2019 - 11:19am
  • Golden Helix VarSeq

    VarSeq software streamlines the process of annotating and filtering variants obtained from next generation sequencing pipelines to find variants of interest. VarSeq simplifies the user interface and provides a scalable architecture featuring repeatable workflows, note taking and reporting, and filter parameter prototyping.

    Last modified date: Thu, 03/28/2019 - 11:20am
  • JMP (Statistics software)

    JMP is the data analysis tool of choice for hundreds of thousands of scientists, engineers and other data explorers worldwide. Users leverage powerful statistical and analytic capabilities in JMP to discover the unexpected. With JMP you can perform data analysis, data acquisition and cleanup, data visualization, reliability analysis, text exploration, statistical modeling, and it integrates with SAS, MATLAB, and R.

    Last modified date: Fri, 08/27/2021 - 4:46pm
  • Partek Flow

    Partek Flow is for the analysis of next generation sequencing data: RNA, small RNA, and DNA sequencing. Functionality provided is quality control, alignment, quantification, statistics, and visualization.

    Last modified date: Thu, 01/03/2019 - 8:57am
  • Partek Genomics Suite

    Partek Genomics Suite is used to analyze high throughput data, for example, from microarray experiments and next generation sequencing experiments. It can be used to analyze any data set with lists of values associated with identifiers and experiment factors. It has a number of clustering and statistical algorithms to aid in the visualization and discovery of patterns in large data sets. Partek is available for PC, Mac and Linux platforms.

    Last modified date: Thu, 01/03/2019 - 8:58am
  • Partek Pathway

    Partek® Pathway™ integrates with Partek Genomics Suite to allow you to interactively browse the KEGG database, then apply advanced statistical models for accurate results.

    Last modified date: Fri, 04/06/2018 - 11:34am
  • Workspace / Room Only

    Reserve the workspace without equipment or software.

    Last modified date: Thu, 03/21/2019 - 12:36pm